Basic Information
VIS ID
TVIS44001171
Fusion event
HTLV-1-LOC107986785 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
39661796/39622197 (Hg38)
End
39661796/39622197 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986785
Nearest miRNA
hsa-mir-1183/Upstream/2702765; hsa-mir-10399/Downstream/3528698;
Nearest TSS
ENST00000635602/Upstream/11907; ENST00000436179/Downstream/1286;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/12286, chr7-CpG: 127/Downstream/747
Nearby gene
RALA(+1356) ;
Upstream sequence
atcttatttagtaaaatacacccttatcctgcccctccctcaaagcaaaacaaggcatcatcattgcctcttccattctcctatctggcagctgccccta
Downstream sequence
gcaaccaattaccagttgatatggcctcttgaatattttaggaatccatctcctttggatgctcactaccattcacacagggtccttaagttttctctta
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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