VISDB Viral Integration Site DataBase

VIS ID

TVIS44001183

Fusion event

HTLV-1-ALG14 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p21.3

Reference genome

Start

End

95518641/95053085 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-606 ; hsa-mir-4477a ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-496 ; hsa-mir-4742-3p ; hsa-mir-3664-5p ; hsa-mir-4714-5p ; hsa-mir-514a-5p ; hsa-mir-4753-5p ; hsa-mir-8055 ; hsa-mir-526b-5p ; hsa-mir-3157-5p ; hsa-mir-4468 ; hsa-mir-205-3p ; hsa-mir-7161-3p ; hsa-mir-4314 ; hsa-mir-7-5p ; hsa-mir-1253 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-5197-3p ; hsa-mir-6807-5p ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-4676-5p ; hsa-mir-575 ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-7703 ; hsa-mir-500a-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-6717-5p ; hsa-mir-661 ; hsa-mir-767-5p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-5186 ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-508-5p ; hsa-mir-5698 ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-7641 ; hsa-mir-143-5p ; hsa-mir-6879-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-4695-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-500b-3p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-4710 ; hsa-mir-139-3p ; hsa-mir-7854-3p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-1273f ; hsa-mir-4786-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-1288-5p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-6888-5p ; hsa-mir-6502-3p

Nearest miRNA

hsa-mir-101-1/Upstream/509306; hsa-mir-11399/Downstream/2992157;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/125525, chr1-CpG: 29/Downstream/19610

Upstream sequence

aaagattccaagaaaaaggtctaagtaaaaaggacaaaataaaataggagaaagaaatctaacgcatcagtaatcacaacaaatgtatatgtaccaaaca

Downstream sequence

tgctagttagaagacaattcccagttctgaatttttaaaattctgctatatgtcatttataaaagacacataaaaaatgcaataacacacacaaaaaagt