Basic Information
VIS ID
TVIS44001189
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
113530154/112987532 (Hg38)
End
113530154/112987532 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/105403; hsa-mir-1182/Downstream/3572492;
Nearest TSS
ENST00000473358/Upstream/30519; ENST00000413231/Downstream/20722;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/30829, chr1-CpG: 57/Downstream/85437
Nearby gene
SLC16A1-AS1(No orient, 23464)
Upstream sequence
tttctttaacaccaggctgagaagtttccaaatcttctgcttcccttttagttctatctttaattcatttctcccttcttacattttactataagcaatc
Downstream sequence
aaaagaagccatgcagaaccttcaacactttgctcagataattctgccaaatatcctggttcatcactcacaagttctgccattcataaaacgttaggac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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