Basic Information
VIS ID
TVIS44001219
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
89782684/89239453 (Hg38)
End
89782684/89239453 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/627519; hsa-mir-1302-10/Downstream/87286;
Nearest TSS
ENST00000557528/Upstream/17702; ENST00000570110/Downstream/4496;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/150475, chr15-CpG: 63/Downstream/4314
Nearby gene
FANCI(+4510) ;
Upstream sequence
aactgagagcggttgctcaaggaactgctttaacagtcactggggcaactacttttcacccagtgtcctctagaaaagaaagatctggagggtcaggcca
Downstream sequence
ctctttttcttcaaaataatgagggggtgcagaagggtagggatgaacctcttcctcctttgccactttagctttagctggcaaacaaacctgctgttac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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