Basic Information
VIS ID
TVIS44001254
Fusion event
HTLV-1-SYN3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
33196562/32800576 (Hg38)
End
33196562/32800576 (Hg38)
Orient
-
Location type
Intronic
Target gene
SYN3
miRNAs that regulate target gene
hsa-mir-4792 ; hsa-mir-6807-5p ; hsa-mir-186-3p
Nearest miRNA
hsa-mir-1286/Upstream/1179045; hsa-let-7a-3/Downstream/636006;
Nearest TSS
ENST00000624155/Upstream/17399; ENST00000266085/Downstream/1125;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/325199, chr22-CpG: 81/Downstream/818
Upstream sequence
tgcttttcctacccacaaagattattgtgagagctataatacggtgagatacagaatcctgcttttaaaaatacaaagCAGAATCAAGATGTCAATAATA
Downstream sequence
AGGATAGTAATTGTGTTAGTTATCTGCAATCATCTATTATAGCTAGTCGTCTAGGATCCTGGATCGTTCTCCTGGTTTTACTACAGTTTTGGATCAGCTC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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