Basic Information
VIS ID
TVIS44001259
Fusion event
HTLV-1-LINC02015 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.32
Reference genome
GRCh37/hg19
Start
177600473/177882685 (Hg38)
End
177600473/177882685 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC02015
Nearest miRNA
hsa-let-7g/Upstream/1367534; hsa-mir-1224/Downstream/6004115;
Nearest TSS
ENST00000440867/Upstream/54902; ENST00000450500/Downstream/52138;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/684619, chr3-CpG: 63/Downstream/1188832
Upstream sequence
AAAGATGGGGACACCTGGAACACAGGAAAGATGTGGTCATGCCTAAGTTGTCTCTTCAGGAGTGAATTTTGTGCATGTGTTACACTCACCACACGCCACC
Downstream sequence
ACACACACCCCCACACAAACACACACAGAGATGCATTCTTTAGAATTTAGCCCATAACCATTGCCTTGGGAAGACTTAGATGTTTTGGCCAATGTACATT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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