Basic Information
VIS ID
TVIS44001273
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
24660713/24660604 (Hg38)
End
24660713/24660604 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5E
Nearest miRNA
hsa-mir-10397/Upstream/7504612; hsa-mir-103a-1/Downstream/7275498;
Nearest TSS
ENST00000502646/Upstream/15626; ENST00000642022/Downstream/179979;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/3200861, chr5-CpG: 68/Downstream/529790
Nearby gene
CDH10(-15626) ;
Upstream sequence
gcagtgagcaagtttccatgggagtgggacccactgagccatgcacgggatataatctcctggtgtgccatttgctaaggccattgggaaagctcagtgt
Downstream sequence
ttaggtggcttcagtttaggtgtttagctcagtgtcttgattttcccagtacagtcagtcatggcttcccttggctaagaaagggaaatcccctgacccc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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