Basic Information
VIS ID
TVIS44001276
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
151653001/152273440 (Hg38)
End
151653001/152273440 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/751292; hsa-mir-103a-1/Downstream/2073666;
Nearest TSS
ENST00000502646/Upstream/56366; ENST00000520353/Downstream/131839;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/348177, chr5-CpG: 50/Downstream/1765183
Nearby gene
LINC01933(-2991) ;
Upstream sequence
ATCCATGAAAGAAaaggaaggaaggagggagggagggaaggaaagggatagaaaaggaagggaagaaaggaagaaagAAGAGACAGAGAGACAGAGAACG
Downstream sequence
AACCTGTTCTATGTAAAGTATTACAAGGGAAATAAAGAGAAGGTCTTTATACTTCCTGTTTTGTTCATTCCCTGACCCCACATTTGAATTCTTTATGTAA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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