Basic Information
VIS ID
TVIS44001285
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
67894733/67184840 (Hg38)
End
67894733/67184840 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/9794628; hsa-mir-10524/Downstream/4192120;
Nearest TSS
ENST00000381078/Upstream/1477615; ENST00000449928/Downstream/704499;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1089902, chr6-CpG: 37/Downstream/1450000
Nearby gene
LOC102723883(No orient, 870510)
Upstream sequence
TGAGATGGGTTGTCACTGAATGATTAAACAGACTTTGATGGCCACTTGTTGCTGTGGAAACACTCCGTCTTCCTCTAAGTTTGTAGAAACTTTTAAATTC
Downstream sequence
TCAGGCAAAGGAAATTCCAAAGTGTTGGTGATTTCtgatagacaattctctactagattttcacgtgtctgtttatcatctgcgcacaagtattggaagt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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