Basic Information
VIS ID
TVIS44001291
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
127749719/128109667 (Hg38)
End
127749719/128109667 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/27707; hsa-mir-10399/Downstream/98205;
Nearest TSS
ENST00000635602/Upstream/20178; ENST00000308868/Downstream/131617;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1472, chr7-CpG: 70/Downstream/25910
Nearby gene
SND1(+17060) ;
Upstream sequence
agccagctgagaaataaggagagagtacaaagagaggaattttgcagctgggccgccgggggcgacatcacatatcggtaggaccgtgatgcccacctga
Downstream sequence
acctcaaaccagcaagttttttattaagggtttcaaaaggggagggtgtctaagaacagggagtagatcacatgcttcaaagggcaaaaaggagaaccac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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