VISDB Viral Integration Site DataBase

VIS ID

TVIS44001319

Fusion event

HTLV-1-TSPAN6 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chrX

Cytoband

q22.1

Reference genome

Start

End

99882384/100627387 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-145-5p ; hsa-mir-142-3p ; hsa-mir-132-3p ; hsa-mir-128-3p ; hsa-mir-124-3p ; hsa-mir-484 ; hsa-mir-331-5p ; hsa-mir-4666a-5p ; hsa-mir-8068 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-5087 ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-298 ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-4678 ; hsa-mir-376c-3p ; hsa-mir-3689d ; hsa-mir-7641 ; hsa-mir-3650 ; hsa-mir-4284 ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-345-5p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4254 ; hsa-mir-6890-3p ; hsa-mir-3690 ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4707-3p ; hsa-mir-619-5p ; hsa-mir-6506-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-520h ; hsa-mir-3973 ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-496 ; hsa-mir-3682-5p ; hsa-mir-4729 ; hsa-mir-16-1-3p ; hsa-mir-7849-3p ; hsa-mir-144-3p

Nearest miRNA

hsa-let-7f-2/Upstream/5564161; hsa-mir-105-1/Downstream/6012427;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/215161, chrX-CpG: 47/Downstream/8915

Upstream sequence

CCCACATCAATTTTGGGACATCAAAAATGAATTATTTTAAACATAGATATATAGTGAAGTAAAATGTAAAATTCTCCAGATTTCTATAAAACAAAACTTA

Downstream sequence

AAAGCTCAAAACCCCCAGCCTGTGCCACTAAGGGAAACTCACTCCCTCTGCCATTAGGATTGTCACCATGGAAATGAGCAGACCTACTGCCTCCAGTGGA