Basic Information
VIS ID
TVIS44001325
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
147170508/147698383 (Hg38)
End
147170508/147698383 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1F
Nearest miRNA
hsa-mir-101-1/Upstream/1847738; hsa-mir-1182/Downstream/636096;
Nearest TSS
ENST00000473358/Upstream/589; ENST00000622634/Downstream/58802;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/27587, chr1-CpG: 31/Downstream/209628
Nearby gene
ACP6(-27874) ;
Upstream sequence
ctgacctcatgatccgcccacctcagcctcccaaagtactgggattacaggcatgagccactgcacccggccCAGAATTTGAtttttgttgttgttgttg
Downstream sequence
ttgagacggtctcactctgacacccaggctggggtgcagtaacatgatcatagctcactgcagcctcatattccttggcttaagcaatcctcctgcctga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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