Basic Information
VIS ID
TVIS44001340
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
23118450/22544311 (Hg38)
End
23118450/22544311 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-4499/Upstream/2110465; hsa-mir-1267/Downstream/1618105;
Nearest TSS
ENST00000623511/Upstream/334026; ENST00000575845/Downstream/372058;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/868695, chr13-CpG: 30/Downstream/152130
Nearby gene
LINC00540(No orient, 267791)
Upstream sequence
ctccaagagtctttctttgaggaaaagaaagactactcttttcctcattagttatcttacaagcttggtcagaaatcaactaatcttaaaatgaggttag
Downstream sequence
tgaggatatactgttgactctcacttttattccattgatccatatttctagccttatactagtatcatacttttgattactgttgctttgtaataatttt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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