Basic Information
VIS ID
TVIS44001348
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
74052059/73759718 (Hg38)
End
74052059/73759718 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/459739; hsa-mir-11181/Downstream/651639;
Nearest TSS
ENST00000557528/Upstream/6971; ENST00000562031/Downstream/8496;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/6174, chr15-CpG: 166/Downstream/166637
Nearby gene
INSYN1(-6548) ; INSYN1-AS1(+8368) ;
Upstream sequence
agttagagccaccctagagccagagctcttccacatttcttcagttactaagtcctgttgcttccacccactttatctccctgtcgataaccaggctctt
Downstream sequence
gattgcacccatgagcccctgtattagccagcagcctcctgatggatctgctaatcttcacacttaccctatgaagtctgctgttgctgttgctggtacc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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