Basic Information
VIS ID
TVIS44001410
Fusion event
HTLV-1-MIR548A1HG integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
18558023/18557792 (Hg38)
End
18558023/18557792 (Hg38)
Orient
+
Location type
Intronic
Target gene
MIR548A1HG
Nearest miRNA
hsa-mir-3691/Upstream/2416168; hsa-mir-10398/Downstream/13992;
Nearest TSS
ENST00000381078/Upstream/35045; ENST00000378700/Downstream/763229;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/170177, chr6-CpG: 36/Downstream/1133887
Nearby gene
MIR548A1(+13992) ;
Upstream sequence
tctcacctttagatggggtggaggtgggagtaggaggcagtaaccagaatcaggacatttctgcctaatacaggtgcttctagcaggcaacttcgactca
Downstream sequence
gacatttcccatgagcctggtagagacttcctcagagcttctctgtgctctggggctcttcccacctgacccaccttgcttccccttctcctttcacagt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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