Basic Information
VIS ID
TVIS44001414
Fusion event
HTLV-1-LOC107986777 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
24208011/24168392 (Hg38)
End
24208011/24168392 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986777
Nearest miRNA
hsa-mir-1183/Upstream/2697246; hsa-mir-10399/Downstream/1781527;
Nearest TSS
ENST00000635602/Upstream/271057; ENST00000407573/Downstream/87327;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/487334, chr7-CpG: 123/Downstream/115547
Nearby gene
NPY(+115796) ;
Upstream sequence
atgcatttcaaccaatcttaaaactttacttaaggccataaagaaaaactcagcaaacaaggagatattctatgttttttactgtaaagactcaatactg
Downstream sequence
taatgaagttaattctccttgaattaattgctaaattaaatatagcccaatatgattttttaatgagtctcagcaaaataatgctaaagttcattcagaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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