Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene277175112764377627646256276635372766576027635805276372702762587727627327276546332765553927658985276592702763498327635172276627832766293227671694
Basic Information
VIS ID
TVIS44001426
Fusion event
HTLV-1-LOC105376002 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
27671692/27671694 (Hg38)
End
27671692/27671694 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9C
Target gene
LOC105376002
Nearest miRNA
hsa-mir-101-2/Upstream/6159509; hsa-let-7a-1/Downstream/1191932;
Nearest TSS
ENST00000422679/Upstream/97828; ENST00000562922/Downstream/157582;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/97705, chr9-CpG: 74/Downstream/1540479
Nearby gene
C9orf72(No orient, 97828)
Upstream sequence
TGAAGCCTTCTTGGGTAAATGAGCTGTTTCTTGGGACATTATAAATCATATTTGGAATCAAGTTTATTTTCAAGCTGCTTTTGAAGTCTCGATGCTGTGC
Downstream sequence
TAACTGAACAGAAAATGTTAAATGTTTGAGGGAGTAGTGCAAGCTCTCAAATGCTAACGGCATGAGCTGGACTTAAAAAAACAAATGGGATTTATACCCT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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