Basic Information
VIS ID
TVIS44001433
Fusion event
HTLV-1-LOC108281114 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
140186529/137292077 (Hg38)
End
140186529/137292077 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC108281114
Nearest miRNA
hsa-let-7a-1/Upstream/122807; hsa-mir-602/Downstream/157949;
Nearest TSS
ENST00000422679/Upstream/14328; ENST00000392815/Downstream/10174;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/10424, chr9-CpG: 153/Downstream/2774
Nearby gene
NRARP(-7554) ;
Upstream sequence
aaagtgctgggattacaggtgtgatccaccatgctcagccTGttctttattttcaagattattattattattttgagatggagttttgctcttgtcgccc
Downstream sequence
aggctggagtgcaatggtgcgatcttggctcactgcaacctctgcctccagggttcaagcaattctcctgcctcagcctcccaagtagctggattacagg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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