Basic Information
VIS ID
TVIS44001452
Fusion event
HTLV-1-LINC00158 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
26802447/25430135 (Hg38)
End
26802447/25430135 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00158
Nearest miRNA
hsa-let-7c/Upstream/2350743; hsa-mir-155/Downstream/143845;
Nearest TSS
ENST00000624081/Upstream/126; ENST00000456917/Downstream/1566;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/67964, chr21-CpG: 51/Downstream/131976
Upstream sequence
tcgtattcataaaatcatcaacatcttcccattgatttatagaaaaattcaatctgttaagggtgctataaatgatgccatacaaggctcctacccttta
Downstream sequence
ctctcatcctcaatcactcccgtattttcactctaggtcccaactttacaaaaatgatgtgttgtttccagaatgtgcacactccctgccCAATGACTGA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate