Basic Information
VIS ID
TVIS44001502
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
95349665/95630821 (Hg38)
End
95349665/95630821 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/8404544; hsa-mir-12124/Downstream/729143;
Nearest TSS
ENST00000440867/Upstream/667891; ENST00000506569/Downstream/987415;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/692506, chr3-CpG: 49/Downstream/1145952
Nearby gene
MTHFD2P1(No orient, 23602)
Upstream sequence
tcaccaaactatttgatatgtttccctttaaggagtggagactaatttcctttttcttgactgtggactgaaattagtgccttgtaatcaatagaaaaca
Downstream sequence
cgagtggaaatgatggtttgtgactttaaattctgtgtaatcaaagattcttcctctgtctctttgttagattgctcgctctgggggacattggatccta
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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