Basic Information
VIS ID
TVIS44001504
Fusion event
HTLV-1-LINC02663 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
9820542/9778579 (Hg38)
End
9820542/9778579 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02663
Nearest miRNA
hsa-mir-3155a/Upstream/3626302; hsa-mir-107/Downstream/2352181;
Nearest TSS
ENST00000439456/Upstream/19342; ENST00000429539/Downstream/280143;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/370333, chr10-CpG: 30/Downstream/487616
Upstream sequence
TGTTAAGTGAAGCAGATGCTTGTTCTCACTATTGGTACTAAAATGTGTTAACTATTCAAAAATAAAATGTAATTCATCTCTATTAAAAATGATGAAGTAC
Downstream sequence
CCTTGAGGATAGCTTCATCAGATACATAATATTTATGAAGAAAATGATTTATCTTTAACATTCCCTGATTACCATCACTTGACTGGGCTCACTCCCTCAC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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