Basic Information
VIS ID
TVIS44001506
Fusion event
HTLV-1-LINC02511 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
137955190/137034036 (Hg38)
End
137955190/137034036 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02511
Nearest miRNA
hsa-mir-12113/Upstream/11526729; hsa-mir-1305/Downstream/6309424;
Nearest TSS
ENST00000502981/Upstream/112654; ENST00000509798/Downstream/159720;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/221448, chr4-CpG: 21/Downstream/1526544
Nearby gene
PCDH18(-484883) ;
Upstream sequence
ACAAGGCATTGACAATAACCTAGGGAAAAAATAAACCATTTGGAAGTAGCAGCAACAGTGAAACTGAAGCTAATGATACATTGATGATTTCCCTAAGGCA
Downstream sequence
CAAGAGAATCTTGaaagaatgtgcagtcacaaatgtccactgcagcactattctcaatagcaaagatacagagtcaacctaaatgcccaacgatgacaaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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