Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS44001514
Basic Information
VIS ID
TVIS44001514
Fusion event
HTLV-1-SLC24A2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
19998151/19998153 (Hg38)
End
19998151/19998153 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA9C
Target gene
SLC24A2
miRNAs that regulate target gene
hsa-mir-1277-5p
;
hsa-mir-3924
;
hsa-mir-190a-3p
;
hsa-mir-5011-5p
;
hsa-mir-6083
;
hsa-mir-4789-5p
;
hsa-mir-4774-5p
;
hsa-mir-4490
;
hsa-mir-340-5p
;
hsa-mir-142-5p
;
hsa-mir-5590-3p
;
hsa-mir-4775
;
hsa-mir-29a-5p
;
hsa-mir-590-3p
;
hsa-mir-410-3p
;
hsa-mir-4672
;
hsa-mir-6768-5p
;
hsa-mir-519e-5p
;
hsa-mir-515-5p
;
hsa-mir-4474-5p
;
hsa-mir-5695
;
hsa-mir-519d-5p
;
hsa-mir-3922-5p
;
hsa-mir-3142
;
hsa-mir-1245b-5p
Nearest miRNA
hsa-mir-101-2/Upstream/1424774; hsa-let-7a-1/Downstream/412995;
Nearest TSS
ENST00000422679/Upstream/72059;
ENST00000604036/Downstream/365416;
Nearest CpG islands
None/Target,
chr9-CpG: 64/Upstream/63324
,
chr9-CpG: 167/Downstream/622272
Nearby gene
SLC24A2
(-211134) ;
Upstream sequence
taatgcatctctcactatttagcacttactctgtgccggaagctgtggtaagtaatttacattcattgtctcaattggtcttcacaatgaaacaacaaaa
Downstream sequence
tctgtaattatcattttctccattttagagatgggagattgagatttagaCATGGCAGGGCTAGGATTCAAACTCTGGCAGATGAACTCTGAGTGTGCCC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Sample Information
×
Sample name
ATL11-CR2
Sample type
Nontumor
Age
27
Gender
Male
CpG Island Information
×
Download
Curate