Basic Information
VIS ID
TVIS44001516
Fusion event
HTLV-1-LOC105370764 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
35282373/34990172 (Hg38)
End
35282373/34990172 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370764
Nearest miRNA
hsa-mir-1233-1/Upstream/461801; hsa-mir-10393/Downstream/382084;
Nearest TSS
ENST00000557528/Upstream/1885; ENST00000560140/Downstream/3474;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/1536, chr15-CpG: 27/Downstream/102698
Nearby gene
ZNF770(-1876) ;
Upstream sequence
TATGAATAAATAAAAAATGTGGGGGCAGGACAGAACATGGTAGGGCAGAGGTGGCAGGGTGAAGAAAAGATAGTATGAGAATGAAAAATAAAGGGGGTGC
Downstream sequence
ATGACATACGTTtgaattagtatcttaatgctgcagcttactagttgtgtccttagaagttatttaacctAggctgggcgcggtggctcacacctgtaat
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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