Basic Information
VIS ID
TVIS44001525
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.11
Reference genome
GRCh37/hg19
Start
24698734/24680617 (Hg38)
End
24698734/24680617 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/4663430; hsa-let-7f-2/Downstream/3814938;
Nearest TSS
ENST00000429181/Upstream/7940; ENST00000493342/Downstream/13302;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/214787, chrX-CpG: 56/Downstream/12896
Nearby gene
PCYT1B(-7755) ;
Upstream sequence
tgccatgagtatagacagataggtaaatggaacagaatagaaaatccagaaaatagatccacgtgtgtggtagattgatttgcaataaaatgccaaggta
Downstream sequence
cttccatgataaaaacaatcgcctttttaaaaagtgcaccatttatagcagcattattcataaaaaccaagaagtagaaacaacccaagtacccattgat
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate