Basic Information
VIS ID
TVIS44001530
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
79463112/80207613 (Hg38)
End
79463112/80207613 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1306364; hsa-mir-105-1/Downstream/4018139;
Nearest TSS
ENST00000429181/Upstream/184544; ENST00000538312/Downstream/127891;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2067818, chrX-CpG: 27/Downstream/127608
Nearby gene
CHMP1B2P(No orient, 20876)
Upstream sequence
cccccatttggcagggggcagccgaggtggggagttgtggagcatgcagcctgcccactactattcgatatctcagctgtggcatctgtgctggaggcat
Downstream sequence
gcgaaagtgctcccacctccttgttctctccctggcctggcaacagcaggggataggacagtgacagtggcaattttaaagaacttgccaactacctctt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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