Basic Information
VIS ID
TVIS44001535
Fusion event
HTLV-1-SCEL integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
78201541/77627406 (Hg38)
End
78201541/77627406 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
SCEL
Nearest miRNA
hsa-mir-1297/Upstream/11409082; hsa-mir-1267/Downstream/70606;
Nearest TSS
ENST00000623511/Upstream/20855; ENST00000377236/Downstream/70448;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/297669, chr13-CpG: 95/Downstream/70247
Upstream sequence
ctgaatgagataatccttgtgaaaacacagtacttcatgacacaaagatagtactcattaaatgttagctgaaaagaagtcgattaatgggtacaaatat
Downstream sequence
acagtttgataaaagaaataagacctagtattagatcagtagggtgactatagtttacaattattgattgtacatttccaaataactagatgagaagaca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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