Basic Information
VIS ID
TVIS44001568
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
26017089/26015467 (Hg38)
End
26017089/26015467 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/1495177; hsa-mir-1243/Downstream/2804115;
Nearest TSS
ENST00000502981/Upstream/87252; ENST00000637313/Downstream/55287;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/101093, chr4-CpG: 25/Downstream/13331
Nearby gene
SMIM20(No orient, 85588)
Upstream sequence
ACGCTCTGAAATGCCAGGGTTCTCATGAGTCCAGCCTGCCAGGAGCAAGGCTTGCCAAAGCTGTGTCCCAGCCAAGCGGGTGGCCTGCGGAGTGAGCCAT
Downstream sequence
AGGACTGCATTCAGCCCAGTTCCAAGCTGGAAGGTGAGGGCAGCCTCCCAACTATTTCTTCCAACCTCAGAAACGATTCAGTGCTGGCAGTTCACACGAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate