VISDB Viral Integration Site DataBase

VIS ID

TVIS44001598

Fusion event

HTLV-1-CAPRIN2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

p11.21

Reference genome

Start

End

30902793/30749859 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-340-5p ; hsa-mir-93-5p ; hsa-let-7f-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-759 ; hsa-mir-555 ; hsa-mir-4477b ; hsa-mir-3159 ; hsa-mir-582-5p ; hsa-mir-338-5p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-541-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-4262 ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-5590-3p ; hsa-mir-616-3p ; hsa-mir-142-5p ; hsa-mir-520f-3p ; hsa-mir-512-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/4875780; hsa-let-7i/Downstream/11573841;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/53777, chr12-CpG: 70/Downstream/4566

Upstream sequence

tctgttggcaatataaattgggcagctgtcagagtatTACTCCAGATATCAAAGTTCATACATTTATTATAGAAGCAACATGTGGCTATAAAGACAGTAA

Downstream sequence

TGAAATACTGAGAATGAAGTTTGCCTGGCTGGAGCAATGAAATATAGCATGTCTTTAACATTTCTTAGAGAGCTACCATGGGAACAATCAATCTCCAACC