Basic Information
VIS ID
TVIS44001617
Fusion event
HTLV-1-LOC102724618 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
32179178/32026244 (Hg38)
End
32179178/32026244 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102724618
Nearest miRNA
hsa-mir-1244-3/Upstream/6152165; hsa-let-7i/Downstream/10297456;
Nearest TSS
ENST00000382841/Upstream/25869; ENST00000550207/Downstream/80591;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/66345, chr12-CpG: 92/Downstream/80071
Nearby gene
RESF1(No orient, 33135)
Upstream sequence
ctgccgttcgcacagcagaaaaggatagacacatcatacccaagtcaaaaaagcgtcatcaccatcaaagttataggtcattgttccagggtcaagccct
Downstream sequence
accaagttaaagctaagaaaactttatctatcttttctttcctttaactactccccatcttattaatgtaactaaatctaactcacctcaaattattact
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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