Basic Information
VIS ID
TVIS44001659
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
85922821/85456477 (Hg38)
End
85922821/85456477 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/8190187; hsa-mir-1185-1/Downstream/8491749;
Nearest TSS
ENST00000550708/Upstream/62529; ENST00000553678/Downstream/60457;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/3922387, chr14-CpG: 45/Downstream/73673
Nearby gene
LINC00911(No orient, 36403)
Upstream sequence
CAAGTATCATTTTATAAAAAGAAAATAGCATTCCATTGTGTTCAATGTTAGAAAATTATGTTCAATGTAGGCTTTAAACTTAATAACTGCAAAACTTCCC
Downstream sequence
TGAGTTATTCTCTAACTTTGATTATTACTATAGGATACAATTCCAGAAACTACAAAGCATCTCATAGAGTAATATTTTCTATCTGTGTACCAATtcatct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate