Basic Information
VIS ID
TVIS44001673
Fusion event
HTLV-1-chr21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
16126833/14754512 (Hg38)
End
16126833/14754512 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA21A
Nearest miRNA
hsa-mir-10396a/Upstream/1030238; hsa-let-7c/Downstream/1784577;
Nearest TSS
ENST00000624081/Upstream/649; ENST00000430391/Downstream/8578;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/370747, chr21-CpG: 171/Downstream/309663
Nearby gene
LOC388813(-111405) ;
Upstream sequence
aaagtattaagaaagatacagaaaatataaaaaagaagttttggagctgaaaaagaaaataaactgcaaaactcactagagaagtttaatggcagacttg
Downstream sequence
atattcagaagaaaacatcagcaaacttgaatatgagtcatgtgaaattatctgctagaggctcaaaatgaaaaaagaatgacaaagaataaagaaaacc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate