Basic Information
VIS ID
TVIS44001706
Fusion event
HTLV-1-LOC107985178 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
62534650/64867414 (Hg38)
End
62534650/64867414 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985178
Nearest miRNA
hsa-mir-1-2/Upstream/6416256; hsa-mir-5011/Downstream/2214170;
Nearest TSS
ENST00000575820/Upstream/607359; ENST00000578545/Downstream/258296;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/864393, chr18-CpG: 88/Downstream/883186
Nearby gene
LINC01924(+443823) ;
Upstream sequence
aactgataaacatcacacacttacaaatgtgtagtccatgagcctcaatcttctgatccaaatgtcaaaacagactACAAAATTTGTACTGAAGTAATTA
Downstream sequence
TGTCTTCTTTAAGCGTACCATTCTGTAGATATAGACATAGTAATAAAACAACTGtatccaggatggtctcgatctcctgacctcatgattcgcccgcctc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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