Basic Information
VIS ID
TVIS44001720
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.32
Reference genome
GRCh37/hg19
Start
5558714/5640673 (Hg38)
End
5558714/5640673 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/3031419; hsa-let-7f-2/Downstream/743233;
Nearest TSS
ENST00000429181/Upstream/1007101; ENST00000217961/Downstream/85284;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1719651, chrX-CpG: 21/Downstream/252293
Nearby gene
NLGN4X(-249353) ;
Upstream sequence
tactatagttatgcaggatgctaccattgggggcaatggaacaaagaatacctacaacctcactgaacttttgtcttttttttgtttttgcaacttcctg
Downstream sequence
tgaatccataactgtttcaaaataaaaagtttCCAAAAGTTTATGAGGGTTGCCTGATATCAACCCTCTTAAGTCCATGATGGTCTTTTACCCAGGATGG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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