Basic Information
VIS ID
TVIS44001757
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
110004756/108244998 (Hg38)
End
110004756/108244998 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/3976593; hsa-mir-202/Downstream/2653092;
Nearest TSS
ENST00000439456/Upstream/47149; ENST00000421481/Downstream/316817;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/329792, chr10-CpG: 63/Downstream/221171
Nearby gene
LINC01435(No orient, 175705)
Upstream sequence
CCTAACTTACTGGCCTCAGGCAGCACGAGATGGATGGGTGAGTGGTAGCTCCCTGCTGCTACCCCATCCCCTCCCAGCTGGGGCTCATGGCCATGTCTGC
Downstream sequence
TTCATGCACACACTGCATACAATAGCCATGCGGGGCTAGAATGAGCTGCAGCTGCCACCCGGGCCACAAGGTGGTTTCAGGGGCTAAGGACCCAGTGTGT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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