Basic Information
VIS ID
TVIS44001761
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
32556727/31982590 (Hg38)
End
32556727/31982590 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/7820086; hsa-mir-1267/Downstream/7681444;
Nearest TSS
ENST00000623511/Upstream/32431; ENST00000441659/Downstream/3095;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/29354, chr13-CpG: 52/Downstream/48593
Nearby gene
EEF1DP3(+23006) ;
Upstream sequence
aatgggaaatattaattttaatatatttaacccaatatgtccagtatgctattattttaacgtgttgtcaatataaaaatgattaatgagatggtttaca
Downstream sequence
ttctttgtttatacttagtctttgaaatctgatgtgtgttttacacagtacatctcacatgctcgatagccacgtaggacgtagtggctaccatactgga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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