Basic Information
VIS ID
TVIS44001814
Fusion event
HTLV-1-chrY integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.223
Reference genome
GRCh37/hg19
Start
21939204/19777318 (Hg38)
End
21939204/19777318 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12120/Upstream/6298052;
Nearest TSS
ENST00000430575/Upstream/32379; ENST00000465253/Downstream/741089;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/209648, chrY-CpG: 16/Downstream/798621
Nearby gene
KDM5D(-32379) ;
Upstream sequence
atcagattcactgaggtcaaaatgaaaggaaaaaatgataagggcagacagagagaaaagccaggttgcctgcaaaaagaagcccctcagtaaaacagca
Downstream sequence
gatctctcaaccaaatccctacaaaccagaaggaactggaggccaatattttacattctcaaataaaataatttttaatttagaattttatatcagacca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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