Basic Information
VIS ID
TVIS44001841
Fusion event
HTLV-1-LINC00907 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
39907353/42327388 (Hg38)
End
39907353/42327388 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00907
Nearest miRNA
hsa-mir-1-2/Upstream/2650609; hsa-mir-122/Downstream/2642694;
Nearest TSS
ENST00000575820/Upstream/101424; ENST00000591940/Downstream/646707;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2485523, chr18-CpG: 180/Downstream/2351630
Upstream sequence
AGTTGTTTTTTGCATCTCCGCCTGACATTCCCATTGCTACCACTCTGGTTTAGGTGTTGTATTTTCTTAAGTCCGTGGACATCATTTGCTGTTTTCTTTT
Downstream sequence
ACTTAAAAATATATATTGCTACAATTTTAGTCTTTATGTAACTTCTGTTCAAAAGCCTTCGAAGGCTACCCATTTGCCCAGAGTTTAAATCCAAATGTTT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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