Basic Information
VIS ID
TVIS44001855
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
103357853/104022152 (Hg38)
End
103357853/104022152 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/3205587; hsa-mir-103a-1/Downstream/6491677;
Nearest TSS
ENST00000502646/Upstream/459359; ENST00000514769/Downstream/57759;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/762303, chr5-CpG: 253/Downstream/3647277
Nearby gene
NUDT12(-459351) ;
Upstream sequence
CTTGCCTGTTTTAAtagtagtttattacagctgctcaaataaattatcacaaattttgtggcttaaaacaactcaaatttattatcttaaaatgctagtg
Downstream sequence
gtcagaagcctaacaacaggtctgtaagactaaaatcaaactgccaaaagagctatgttctttctggaggccctgggggtgaaacttctttgcttctaga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate