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VISDB
Viral Integration Site DataBase
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TVIS44001865
Basic Information
VIS ID
TVIS44001865
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
65074005/65609092 (Hg38)
End
65074005/65609092 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7J
Nearest miRNA
hsa-mir-1183/Upstream/929916; hsa-mir-10399/Downstream/1505230;
Nearest TSS
ENST00000635602/Upstream/146021;
ENST00000434382/Downstream/264175;
Nearest CpG islands
None/Target,
chr7-CpG: 39/Upstream/36141
,
chr7-CpG: 102/Downstream/38254
Nearby gene
LOC441242
(-37919) ;
Upstream sequence
TCCTACTTGTGCTGGCTACAATTCCAGTTTTCTACCATTTGTATAGATTGCCTTTCTTTGTGCAACAAGACGTCTTTGAAAGGAAGTTTTAACATTAAAT
Downstream sequence
AATAACATTCTATTAATTATTTGCCTTATAAGGCAAACAATAATCTACGGTTGTTTCAGAAAAATGATATCTTCATTTTTGTATACATTTCAATTATACA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Sample Information
×
Sample name
ATL11-CR2
Sample type
Nontumor
Age
27
Gender
Male
CpG Island Information
×
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