Basic Information
VIS ID
TVIS44001875
Fusion event
HTLV-1-LOC102723803 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
1347869/1347869 (Hg38)
End
1347869/1347869 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102723803
Nearest miRNA
hsa-mir-1302-9/Upstream/1317588; hsa-let-7a-1/Downstream/3502428;
Nearest TSS
ENST00000422679/Upstream/293245; ENST00000637134/Downstream/632421;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/295629, chr9-CpG: 266/Downstream/666962
Nearby gene
DMRT2(+290315) ;
Upstream sequence
ATTATACTATTTATATAAATAAAATCATTCTAGAGTATTGCCTATTTATAGCAAAGGTTTTTTTTGCCATATGAGATGAATTGATAATTAATCTGTATAT
Downstream sequence
ATTTTTTGTTGGCAATTTCTTTAGAAAAATACGACAAAATATAAAGTATTATAAAATAAATACAAAAGGTCTACAAAATTGCAACCATATTTGTTATAAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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