Basic Information
VIS ID
TVIS44001898
Fusion event
HTLV-1-LRP1B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
142667152/141909583 (Hg38)
End
142667152/141909583 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LRP1B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-200c-3p ; hsa-mir-106b-3p ; hsa-mir-5692a
Nearest miRNA
hsa-mir-128-1/Upstream/1322898; hsa-mir-10b/Downstream/7420695;
Nearest TSS
ENST00000437798/Upstream/99182; ENST00000410015/Downstream/221422;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3128503, chr2-CpG: 58/Downstream/220572
Nearest cancer related gene
LRP1B(TSG, No orient, 0)
Upstream sequence
TTCAGGCATCTGGGTTAATTTAATCAGACTAAGGTCTCAGACAttttttttttttttttttttttttttttttttttACCTCTGGAGGAGGGACATTTTG
Downstream sequence
TTTAAATGAATGAATAGACCCTGGGGCAGATGGCAGTAATTTTGTGCTCACCAGTGGAGCCATACTAAAAATGACACTGAACCACAGCAGTAGCAAGACA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate