Basic Information
VIS ID
TVIS44001964
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
142860429/143141587 (Hg38)
End
142860429/143141587 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/8703681; hsa-mir-1224/Downstream/8424289;
Nearest TSS
ENST00000440867/Upstream/22256; ENST00000479030/Downstream/200659;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/19591, chr3-CpG: 217/Downstream/829304
Nearby gene
CHST2(+17573) ;
Upstream sequence
cctcagtctttgcctttcatgaccttgacacttctgagagtactggccagttattttgtggaatatcccttaattagagtttgtctaatgcttcataatt
Downstream sequence
attaaattcaggttatgcattttgacaagaacatcacagaagtgatgttgtgtccttctttgtgcaacatatgaggaggcacatgagattgatttattct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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