Basic Information
VIS ID
TVIS44001975
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
129514738/129644843 (Hg38)
End
129514738/129644843 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/1122394; hsa-mir-4697/Downstream/1021892;
Nearest TSS
ENST00000527297/Upstream/27574; ENST00000525709/Downstream/170976;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/26435, chr11-CpG: 45/Downstream/170999
Nearby gene
LINC01395(No orient, 27574)
Upstream sequence
GTCTGTTCTTCACAATTATATTTGGATGTCTGTTGTGTGTTAATACGTTGGTGCAAAAGTCACGTATgtgtaggaggtaaagatgaataaaatgtgcctg
Downstream sequence
acctcaaaaagttaccctcagtgtgagaaacttgagttcatcaattaacaaaaattcaaagaggaatgacacaagtgctctaatagaaatgtatcagggt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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