Basic Information
VIS ID
TVIS44002030
Fusion event
HTLV-1-LOC105370284 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
82420828/81846693 (Hg38)
End
82420828/81846693 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370284
Nearest miRNA
hsa-mir-1297/Upstream/4148577; hsa-mir-1267/Downstream/5771972;
Nearest TSS
ENST00000623511/Upstream/596255; ENST00000446314/Downstream/2035700;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1191383, chr13-CpG: 18/Downstream/2032836
Upstream sequence
AACTATAAAAGAAGTTTGGTAGTGCGCAATTTAACAGGCTGTGGGGGGTATACTTAGTTTACAAGTATAATATTTTTCTAGAATATGAATTGGATACTCT
Downstream sequence
GTTTGCAGTTACATACTGGTAACTGTCTGAATGGCATGTGCTATTTTCTTTCAAAATATGCTCATTTTACATATAATTTAGTCAAATAGTTTAAATTTTG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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