Basic Information
VIS ID
TVIS44002056
Fusion event
HTLV-1-LOC102723932 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
82173521/79558606 (Hg38)
End
82173521/79558606 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102723932
Nearest miRNA
hsa-mir-101-2/Upstream/8748522; hsa-let-7a-1/Downstream/4411142;
Nearest TSS
ENST00000422679/Upstream/26264; ENST00000376525/Downstream/13167;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1260911, chr9-CpG: 280/Downstream/11958
Nearby gene
TLE4(+13167) ;
Upstream sequence
CTTGGTATGAATGTAACTTTTTTAGTATTAATTTGGGGCAGGCCAAAAGAGAAATTTCAGAAGCAGGACTTGTAATATAGAGGTTTTGTGCTGTTACTGA
Downstream sequence
AACTTTTTCTTCCTGGCATTCTTTAAAAAGAAACTTTCCTGAGATGCCTGGTGAGGTAACACGAGTGGCTTCTCTGGCCAGGATTTAGCTGCCTCCCAGG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate