Basic Information
VIS ID
TVIS44002069
Fusion event
HTLV-1-LOC107984781 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
70842011/70549672 (Hg38)
End
70842011/70549672 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984781
Nearest miRNA
hsa-mir-10393/Upstream/470204; hsa-mir-11181/Downstream/2037545;
Nearest TSS
ENST00000557528/Upstream/43744; ENST00000630100/Downstream/36934;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/448805, chr15-CpG: 56/Downstream/35369
Nearby gene
SALRNA3(No orient, 65875)
Upstream sequence
atggaaacttaactatctgctatctacaaaaaacccactttaaacataaaatcagatgtgttagaagtagaataaaaaaaattatgccatgcaaaaacca
Downstream sequence
atccaaaaaatgttagattgcctataataagatcagacaaagtagaatttagagcaaggaatattacttgagacaaagagaggcattacgtaatgacaga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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