Basic Information
VIS ID
TVIS44002075
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
45517573/45290434 (Hg38)
End
45517573/45290434 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/9818948; hsa-mir-10b/Downstream/2087241;
Nearest TSS
ENST00000437798/Upstream/121851; ENST00000472021/Downstream/157661;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/119387, chr2-CpG: 19/Downstream/20498
Nearby gene
LINC01121(No orient, 35493)
Upstream sequence
ttcaaattgaaatctcatgtggaagccaaatacttaaaacCTCAGGCCCACGGAATAGGCCCCTTCCTTTTTGATCCCTTAGGGTTTTCTCTTTAGCTCC
Downstream sequence
ATCTCGGAATGAAAGTGATGAGCTCTGTCTTACTGTTTCTGCAAACAGACACTCCACATGACCTGCTAGATGAGAGAGGGTCCTCCACACACATGCCATG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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