Basic Information
VIS ID
TVIS44002078
Fusion event
HTLV-1-chr20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
16697236/16716591 (Hg38)
End
16697236/16716591 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/6066896; hsa-mir-1-1/Downstream/1754024;
Nearest TSS
ENST00000382410/Upstream/136333; ENST00000478522/Downstream/13370;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/141457, chr20-CpG: 49/Downstream/13271
Nearby gene
SNRPB2(+13373) ;
Upstream sequence
AGTGGAAACATCCAATGAGCTGGTTGATATATGTGCCTCTTGTTCTGCTGCTTGCTGCCAGGGCAACCTGTAGGACTCTATCTGCCTGGAAATAATTAAT
Downstream sequence
GCCTAAAATGGAATgatataaaaaaatatgaagcaaggactctgacctcaaagagctcacactcaacttggaaagatagTAACTCTACACACGACACTAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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