Basic Information
VIS ID
TVIS44002088
Fusion event
HTLV-1-LOC285500 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
178408159/177487005 (Hg38)
End
178408159/177487005 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC285500
Nearest miRNA
hsa-mir-12113/Upstream/3063141; hsa-mir-1305/Downstream/4682288;
Nearest TSS
ENST00000502981/Upstream/42026; ENST00000507870/Downstream/204063;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/44451, chr4-CpG: 160/Downstream/2570880
Nearby gene
AGA(-44502) ;
Upstream sequence
CAATGACTAACACTGATTCCCCCAACCCTTTTTGCAGAAATCAATCACCCTGGCTTTCTTGATATAGCATTTTATAGTTCTCCTATCTCCCACTAAAGGA
Downstream sequence
AGAAATAGAAAGACAGAGAGAGAGAGAGAATGGTGAGACATACTTAAttaatataaataattggtttacactattatagaggtggagaagtctgaagatc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate